How can one edit the bitcoin.conf in such a way that changes are persisted after the bitcoin container is restarted. I accept any broken things that can occur as a result of my tinkering
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This is something that is not recommended due to the high risk of causing problems to your server.
If you are an experienced user that is willing to take on the responsibility then the command to make changes that persist after a reboot is:
sudo /usr/lib/startos/scripts/chroot-and-upgrade
But again please be mindful that this is an advanced feature and should not be used without an in depth knowledge of the changes you are doing and what can go wrong.